Microbiology

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Microbiology

The microbiology department is the area where pathogenic microorganisms are detected and identified. The department is divided in three sections: bacteriology, virology, and mycology. Sometimes another department for parasitology is created, but its services are not used frequently in the United States.
The microbiology department receives various specimens from the specimen collection and processing department. Such specimens include blood, body fluids, respiratory specimens, skin scrapings, stool, swabs of various kinds, and urine.
A biosafety level is assigned to each laboratory based on the classification of biological agents handled and their associated risk (Table 2). Additional safety training and equipment may be necessary depending on the microbiology department's biosafety level.
Table 2. Biosafety Levels and their Associated Risks and PPE.
Biosafety LevelAgentsRisk of Causing DiseaseProtection and TrainingExample
1Well knownLow
Standard PPE and lab practices
Bacillus subtilis (bacterium)
2Well knownModerate
Limited lab access, disposal precautions, biosafety hoods
Salmonella spp. (bacteria)
3RareHigh
Required handling training, biosafety hood work only, specialized PPE
Mycobacterium tuberculosis (bacterium)
4Very rare
Very high
(often with no vaccine or treatment options)
Required handling training, specialized engineering features to control air movement, specialized PPE
Ebola
(extremely contagious virus)

A biosafety hood, which creates an enclosed, ventilated area for
harsh chemical or biological specimen work.